IL_8BHF_229

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8BHF|1|A3|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_229 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1341

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8BHF|1|A3|G|952
8BHF|1|A3|C|953
8BHF|1|A3|U|954
8BHF|1|A3|A|955
8BHF|1|A3|G|956
*
8BHF|1|A3|C|967
8BHF|1|A3|U|968
8BHF|1|A3|U|969
8BHF|1|A3|G|970
8BHF|1|A3|G|971
8BHF|1|A3|A|972
8BHF|1|A3|C|973
8BHF|1|A3|C|974

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain C3

40S ribosomal protein S3a

Chain P3

Ribosomal protein S14