IL_8BHF_233

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_233 not in the Motif Atlas

Homologous match to IL_4V88_438

Geometric discrepancy: 0.1476

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8BHF|1|A3|C|1098
8BHF|1|A3|G|1099
8BHF|1|A3|A|1100
8BHF|1|A3|U|1101
*
8BHF|1|A3|G|1131
8BHF|1|A3|C|1132
8BHF|1|A3|A|1133
8BHF|1|A3|G|1134

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain B3

40S_SA_C domain-containing protein

Chain C3

40S ribosomal protein S3a

Chain O3

ribosomal protein uS15

Chain S3

40S ribosomal protein S17

Chain b3

40S ribosomal protein S26