IL_8BHF_236

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_236 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0928

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8BHF|1|A3|G|1168
8BHF|1|A3|G|1169
8BHF|1|A3|A|1170
8BHF|1|A3|G|1171
8BHF|1|A3|U|1172
8BHF|1|A3|A|1173
8BHF|1|A3|U|1174
8BHF|1|A3|G|1175
*
8BHF|1|A3|U|1186
8BHF|1|A3|G|1187
8BHF|1|A3|A|1188
8BHF|1|A3|A|1189
8BHF|1|A3|A|1190
8BHF|1|A3|C|1191

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain Y3

Ribosomal protein S23

Chain a1

60S ribosomal protein L41