IL_8BHF_249
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 8BHF|1|A3|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_249 not in the Motif Atlas
- Homologous match to IL_4V88_452
- Geometric discrepancy: 0.1972
- The information below is about IL_4V88_452
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
8BHF|1|A3|C|1337
8BHF|1|A3|G|1338
*
8BHF|1|A3|C|1488
8BHF|1|A3|A|1489
8BHF|1|A3|G|1490
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain D3
- 40S ribosomal protein S2
- Chain E3
- Ribosomal protein S3
- Chain R3
- Ribosomal protein S16
- Chain V3
- Ribosomal protein S20
- Chain e3
- 40S ribosomal protein S29
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