IL_8BHF_250

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_250 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.0905

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

8BHF|1|A3|U|1347
8BHF|1|A3|G|1348
8BHF|1|A3|G|1349
*
8BHF|1|A3|C|1380
8BHF|1|A3|G|1381
8BHF|1|A3|A|1382

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain B3

40S_SA_C domain-containing protein

Chain D3

40S ribosomal protein S2

Chain E3

Ribosomal protein S3

Chain S3

40S ribosomal protein S17