IL_8BHF_252
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 8BHF|1|A3|U|1397
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_252 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3553
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8BHF|1|A3|C|1395
8BHF|1|A3|A|1396
8BHF|1|A3|U|1397
8BHF|1|A3|G|1398
8BHF|1|A3|C|1399
*
8BHF|1|A3|G|1447
8BHF|1|A3|A|1448
8BHF|1|A3|G|1449
8BHF|1|A3|G|1450
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain R3
- Ribosomal protein S16
- Chain S3
- 40S ribosomal protein S17
- Chain V3
- Ribosomal protein S20
- Chain h3
- Ribosomal protein RACK1
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