IL_8BHF_253

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

8BHF|1|A3|C|1403, 8BHF|1|A3|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_253 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1291

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8BHF|1|A3|A|1402
8BHF|1|A3|C|1403
8BHF|1|A3|U|1404
8BHF|1|A3|A|1405
*
8BHF|1|A3|U|1441
8BHF|1|A3|U|1442
8BHF|1|A3|C|1443
8BHF|1|A3|U|1444

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain R3

Ribosomal protein S16

Chain V3

Ribosomal protein S20

Chain h3

Ribosomal protein RACK1