IL_8BHF_255

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_255 not in the Motif Atlas

Geometric match to IL_4WF9_017

Geometric discrepancy: 0.1199

The information below is about IL_4WF9_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

8BHF|1|A3|A|1537
8BHF|1|A3|C|1538
8BHF|1|A3|U|1539
*
8BHF|1|A3|A|1594
8BHF|1|A3|U|1595
8BHF|1|A3|U|1596

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain G3

Ribosomal protein S5

Chain R3

Ribosomal protein S16

Chain T3

40S ribosomal protein S18

Chain U3

40S ribosomal protein S19

Chain a3

40S ribosomal protein S25