IL_8BHF_260
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_260 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.1284
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BHF|1|A3|G|1702
8BHF|1|A3|C|1703
8BHF|1|A3|C|1704
8BHF|1|A3|C|1705
*
8BHF|1|A3|G|1829
8BHF|1|A3|U|1830
8BHF|1|A3|A|1831
8BHF|1|A3|A|1832
8BHF|1|A3|C|1833
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain 21
- Transfer RNA; tRNA
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain a1
- 60S ribosomal protein L41
- Chain m1
- mRNA
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