IL_8BHF_269

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_269 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1847

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8BHF|1|A3|C|1742
8BHF|1|A3|G|1743
8BHF|1|A3|G|1744
8BHF|1|A3|A|1745
8BHF|1|A3|U|1746
*
8BHF|1|A3|A|1788
8BHF|1|A3|G|1789
8BHF|1|A3|A|1790
8BHF|1|A3|A|1791
8BHF|1|A3|G|1792

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain H3

40S ribosomal protein S6

Chain J1

TRASH domain-containing protein

Chain J3

40S ribosomal protein S8