IL_8BHF_272

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_272 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.345

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8BHF|1|A3|G|1757
8BHF|1|A3|G|1758
8BHF|1|A3|G|1759
*
8BHF|1|A3|C|1773
8BHF|1|A3|C|1774
8BHF|1|A3|U|1775

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain H3

40S ribosomal protein S6

Chain J1

TRASH domain-containing protein