IL_8BHF_276

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUCUC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_276 not in the Motif Atlas

Homologous match to IL_7RQB_114

Geometric discrepancy: 0.1315

The information below is about IL_7RQB_114

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.6

Basepair signature

cWW-cWS-L-tSW-L-cWW

Number of instances in this motif group

8

Unit IDs

8BHF|1|B2|A|32
8BHF|1|B2|U|33
8BHF|1|B2|C|34
8BHF|1|B2|U|35
8BHF|1|B2|C|36
*
8BHF|1|B2|G|41
8BHF|1|B2|A|42
8BHF|1|B2|U|43
8BHF|1|B2|C|44
8BHF|1|B2|U|45

Current chains

Chain B2

5S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain m3

60S ribosomal protein L5

Chain s3

60S ribosomal protein L11