IL_8BHF_281

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAU*AAAUGUG

Length

12 nucleotides

Bulged bases

8BHF|1|A2|G|119, 8BHF|1|A2|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BHF|1|A2|C|118
8BHF|1|A2|G|119
8BHF|1|A2|A|120
8BHF|1|A2|A|121
8BHF|1|A2|U|122
*
8BHF|1|A2|A|147
8BHF|1|A2|A|148
8BHF|1|A2|A|149
8BHF|1|A2|U|150
8BHF|1|A2|G|151
8BHF|1|A2|U|152
8BHF|1|A2|G|153

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Ribosomal protein L15

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain U1

60S ribosomal protein L35

Chain p3

60S ribosomal protein L7a