IL_8BHF_288

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCU*GAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_288 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.0757

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8BHF|1|A2|G|4386
8BHF|1|A2|G|4387
8BHF|1|A2|C|4388
8BHF|1|A2|U|4389
*
8BHF|1|A2|G|4426
8BHF|1|A2|A|4427
8BHF|1|A2|U|4428
8BHF|1|A2|C|4429
8BHF|1|A2|C|4430

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain O1

60S ribosomal protein L29

Chain k3

Ribosomal protein L3

Chain r3

Ribosomal protein L10