IL_8BHF_292

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGACU*AGGCCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_292 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.3643

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

8BHF|1|A3|G|534
8BHF|1|A3|G|535
8BHF|1|A3|A|536
8BHF|1|A3|C|537
8BHF|1|A3|U|538
*
8BHF|1|A3|A|545
8BHF|1|A3|G|546
8BHF|1|A3|G|547
8BHF|1|A3|C|548
8BHF|1|A3|C|549
8BHF|1|A3|C|550

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain f3

Ubiquitin-like domain-containing protein