IL_8BHJ_035

3D structure

PDB id

8BHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8BHJ|1|0|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHJ_035 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.1308

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8BHJ|1|0|U|1018
8BHJ|1|0|U|1019
8BHJ|1|0|A|1020
8BHJ|1|0|A|1021
8BHJ|1|0|G|1022
8BHJ|1|0|U|1023
8BHJ|1|0|G|1024
*
8BHJ|1|0|C|1140
8BHJ|1|0|U|1141
8BHJ|1|0|A|1142
8BHJ|1|0|A|1143
8BHJ|1|0|A|1144

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain e

50S ribosomal protein L36