IL_8BHJ_138
3D structure
- PDB id
- 8BHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.81 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8BHJ|1|2|A|532, 8BHJ|1|2|U|534, 8BHJ|1|2|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHJ_138 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1825
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BHJ|1|2|G|515
8BHJ|1|2|U|516
8BHJ|1|2|G|517
8BHJ|1|2|C|518
8BHJ|1|2|C|519
8BHJ|1|2|A|520
8BHJ|1|2|G|521
*
8BHJ|1|2|C|528
8BHJ|1|2|G|529
8BHJ|1|2|G|530
8BHJ|1|2|U|531
8BHJ|1|2|A|532
8BHJ|1|2|A|533
8BHJ|1|2|U|534
8BHJ|1|2|A|535
8BHJ|1|2|C|536
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain 3
- mRNA
- Chain 5
- Transfer RNA; tRNA
- Chain g
- 30S ribosomal protein S3
- Chain p
- 30S ribosomal protein S12
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