IL_8BHL_136

3D structure

PDB id

8BHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8BHL|1|2|A|532, 8BHL|1|2|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHL_136 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1387

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8BHL|1|2|G|515
8BHL|1|2|U|516
8BHL|1|2|G|517
8BHL|1|2|C|518
8BHL|1|2|C|519
8BHL|1|2|A|520
8BHL|1|2|G|521
*
8BHL|1|2|C|528
8BHL|1|2|G|529
8BHL|1|2|G|530
8BHL|1|2|U|531
8BHL|1|2|A|532
8BHL|1|2|A|533
8BHL|1|2|U|534
8BHL|1|2|A|535
8BHL|1|2|C|536

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 3

mRNA

Chain g

30S ribosomal protein S3

Chain p

30S ribosomal protein S12