3D structure

PDB id
8BHP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.37 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
8BHP|1|0|A|1801, 8BHP|1|0|C|1816, 8BHP|1|0|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BHP_066 not in the Motif Atlas
Homologous match to IL_5J7L_313
Geometric discrepancy: 0.1103
The information below is about IL_5J7L_313
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

8BHP|1|0|U|1798
8BHP|1|0|G|1799
8BHP|1|0|C|1800
8BHP|1|0|A|1801
8BHP|1|0|A|1802
8BHP|1|0|A|1803
8BHP|1|0|C|1804
*
8BHP|1|0|G|1813
8BHP|1|0|G|1814
8BHP|1|0|A|1815
8BHP|1|0|C|1816
8BHP|1|0|G|1817
8BHP|1|0|U|1818
8BHP|1|0|A|1819
8BHP|1|0|U|1820
8BHP|1|0|A|1821

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain A
50S ribosomal protein L2

Coloring options:


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