IL_8BIM_067

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8BIM|1|0|A|1801, 8BIM|1|0|C|1816, 8BIM|1|0|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_067 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1035

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8BIM|1|0|U|1798
8BIM|1|0|G|1799
8BIM|1|0|C|1800
8BIM|1|0|A|1801
8BIM|1|0|A|1802
8BIM|1|0|A|1803
8BIM|1|0|C|1804
*
8BIM|1|0|G|1813
8BIM|1|0|G|1814
8BIM|1|0|A|1815
8BIM|1|0|C|1816
8BIM|1|0|G|1817
8BIM|1|0|U|1818
8BIM|1|0|A|1819
8BIM|1|0|U|1820
8BIM|1|0|A|1821

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2