IL_8BIM_165

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

8BIM|1|2|A|1257, 8BIM|1|2|A|1280, 8BIM|1|2|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_165 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.2535

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8BIM|1|2|G|1255
8BIM|1|2|A|1256
8BIM|1|2|A|1257
8BIM|1|2|G|1258
*
8BIM|1|2|C|1277
8BIM|1|2|G|1278
8BIM|1|2|G|1279
8BIM|1|2|A|1280
8BIM|1|2|C|1281
8BIM|1|2|C|1282

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain g

30S ribosomal protein S3

Chain n

30S ribosomal protein S10

Chain r

30S ribosomal protein S14