IL_8BIM_173

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_173 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.1084

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8BIM|1|2|A|1430
8BIM|1|2|A|1431
8BIM|1|2|G|1432
8BIM|1|2|A|1433
8BIM|1|2|A|1434
8BIM|1|2|G|1435
*
8BIM|1|2|C|1466
8BIM|1|2|C|1467
8BIM|1|2|A|1468
8BIM|1|2|C|1469
8BIM|1|2|U|1470

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain M

50S ribosomal protein L19

Chain x

30S ribosomal protein S20