IL_8BIP_028
3D structure
- PDB id
- 8BIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8BIP|1|1|A|933, 8BIP|1|1|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BIP_028 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.1064
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BIP|1|1|G|805
8BIP|1|1|A|806
8BIP|1|1|A|807
8BIP|1|1|A|808
8BIP|1|1|G|809
*
8BIP|1|1|C|931
8BIP|1|1|U|932
8BIP|1|1|A|933
8BIP|1|1|G|934
8BIP|1|1|U|935
8BIP|1|1|A|936
8BIP|1|1|G|937
8BIP|1|1|C|938
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-A
- Chain LL
- 60S ribosomal protein L13-A
- Chain LN
- 60S ribosomal protein L15-A
- Chain La
- 60S ribosomal protein L28
- Chain Lj
- 60S ribosomal protein L37-A
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