IL_8BIP_043

3D structure

PDB id

8BIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

8BIP|1|1|C|1016, 8BIP|1|1|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIP_043 not in the Motif Atlas

Homologous match to IL_5TBW_043

Geometric discrepancy: 0.2532

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

8BIP|1|1|G|1013
8BIP|1|1|U|1014
8BIP|1|1|U|1015
8BIP|1|1|C|1016
8BIP|1|1|C|1017
8BIP|1|1|G|1018
*
8BIP|1|1|U|1034
8BIP|1|1|G|1035
8BIP|1|1|A|1036
8BIP|1|1|C|1037

Current chains

Chain 1

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain LJ

60S ribosomal protein L11-B