3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUCAUCAG*CUCAAG
Length
14 nucleotides
Bulged bases
8BIP|1|1|U|1191, 8BIP|1|1|C|1192, 8BIP|1|1|C|1316, 8BIP|1|1|A|1318
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BIP_050 not in the Motif Atlas
Geometric match to IL_5TBW_051
Geometric discrepancy: 0.1263
The information below is about IL_5TBW_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_27086.1
Basepair signature
cWW-tWW-L-tWW-cWW-L
Number of instances in this motif group
2

Unit IDs

8BIP|1|1|C|1187
8BIP|1|1|U|1188
8BIP|1|1|C|1189
8BIP|1|1|A|1190
8BIP|1|1|U|1191
8BIP|1|1|C|1192
8BIP|1|1|A|1193
8BIP|1|1|G|1194
*
8BIP|1|1|C|1314
8BIP|1|1|U|1315
8BIP|1|1|C|1316
8BIP|1|1|A|1317
8BIP|1|1|A|1318
8BIP|1|1|G|1319

Current chains

Chain 1
25S rRNA

Nearby chains

Chain LH
60S ribosomal protein L9-A
Chain LO
60S ribosomal protein L16-A
Chain LS
60S ribosomal protein L20-A
Chain Lm
60S ribosomal protein L40-A

Coloring options:


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