IL_8BIP_065

3D structure

PDB id

8BIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

8BIP|1|1|U|1820, 8BIP|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIP_065 not in the Motif Atlas

Homologous match to IL_8C3A_071

Geometric discrepancy: 0.2609

The information below is about IL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8BIP|1|1|G|1623
8BIP|1|1|G|1624
8BIP|1|1|A|1625
*
8BIP|1|1|U|1818
8BIP|1|1|U|1819
8BIP|1|1|U|1820
8BIP|1|1|U|1821
8BIP|1|1|C|1822

Current chains

Chain 1

25S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34-A

Chain Lk

60S ribosomal protein L38