3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGAUGG*UGUUGACG
Length
14 nucleotides
Bulged bases
8BIP|1|1|U|2159, 8BIP|1|1|U|2175, 8BIP|1|1|C|2179
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BIP_087 not in the Motif Atlas
Homologous match to IL_8C3A_088
Geometric discrepancy: 0.0873
The information below is about IL_8C3A_088
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_64509.1
Basepair signature
cWW-tWW-tWW-tSS-L-cWW
Number of instances in this motif group
2

Unit IDs

8BIP|1|1|C|2156
8BIP|1|1|G|2157
8BIP|1|1|A|2158
8BIP|1|1|U|2159
8BIP|1|1|G|2160
8BIP|1|1|G|2161
*
8BIP|1|1|U|2173
8BIP|1|1|G|2174
8BIP|1|1|U|2175
8BIP|1|1|U|2176
8BIP|1|1|G|2177
8BIP|1|1|A|2178
8BIP|1|1|C|2179
8BIP|1|1|G|2180

Current chains

Chain 1
25S rRNA

Nearby chains

Chain LA
60S ribosomal protein L2-A
Chain Lp
60S ribosomal protein L43-A

Coloring options:


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