IL_8BJQ_118

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

8BJQ|1|1|A|3142, 8BJQ|1|1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BJQ_118 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1042

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8BJQ|1|1|C|3004
8BJQ|1|1|A|3005
8BJQ|1|1|A|3006
8BJQ|1|1|U|3007
*
8BJQ|1|1|A|3139
8BJQ|1|1|G|3140
8BJQ|1|1|A|3141
8BJQ|1|1|A|3142
8BJQ|1|1|C|3143
8BJQ|1|1|G|3144

Current chains

Chain 1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L16-A