IL_8BJQ_153

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8BJQ|1|1|U|1235, 8BJQ|1|1|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BJQ_153 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.5782

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8BJQ|1|1|G|1234
8BJQ|1|1|U|1235
8BJQ|1|1|G|1236
8BJQ|1|1|G|1237
8BJQ|1|1|C|1238
*
8BJQ|1|1|G|1250
8BJQ|1|1|A|1251
8BJQ|1|1|A|1252
8BJQ|1|1|U|1253
8BJQ|1|1|C|1254

Current chains

Chain 1

25S rRNA

Nearby chains