3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAAUGUAG*UAUUAUAGC
Length
17 nucleotides
Bulged bases
8BN3|1|1|U|534, 8BN3|1|1|U|558
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BN3_020 not in the Motif Atlas
Homologous match to IL_5TBW_020
Geometric discrepancy: 0.0798
The information below is about IL_5TBW_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07703.1
Basepair signature
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8BN3|1|1|G|531
8BN3|1|1|A|532
8BN3|1|1|A|533
8BN3|1|1|U|534
8BN3|1|1|G|535
8BN3|1|1|U|536
8BN3|1|1|A|537
8BN3|1|1|G|538
*
8BN3|1|1|U|553
8BN3|1|1|A|554
8BN3|1|1|U|555
8BN3|1|1|U|556
8BN3|1|1|A|557
8BN3|1|1|U|558
8BN3|1|1|A|559
8BN3|1|1|G|560
8BN3|1|1|C|561

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain M4
60S ribosomal protein L14-A
Chain N0
60S ribosomal protein L20-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0961 s