IL_8BN3_028
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8BN3|1|1|A|933, 8BN3|1|1|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BN3_028 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.0563
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BN3|1|1|G|805
8BN3|1|1|A|806
8BN3|1|1|A|807
8BN3|1|1|A|808
8BN3|1|1|G|809
*
8BN3|1|1|C|931
8BN3|1|1|U|932
8BN3|1|1|A|933
8BN3|1|1|G|934
8BN3|1|1|U|935
8BN3|1|1|A|936
8BN3|1|1|G|937
8BN3|1|1|C|938
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L4
- RPL4A isoform 1
- Chain M3
- 60S ribosomal protein L13-A
- Chain M5
- Ribosomal protein L15
- Chain N8
- 60S ribosomal protein L28
- Chain O7
- Large ribosomal subunit protein eL37A
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