3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GGG*UAAUC
Length
8 nucleotides
Bulged bases
8BN3|1|1|G|908, 8BN3|1|1|A|920, 8BN3|1|1|A|921
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BN3_034 not in the Motif Atlas
Geometric match to IL_5TBW_033
Geometric discrepancy: 0.067
The information below is about IL_5TBW_033
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_90991.8
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

8BN3|1|1|G|907
8BN3|1|1|G|908
8BN3|1|1|G|909
*
8BN3|1|1|U|919
8BN3|1|1|A|920
8BN3|1|1|A|921
8BN3|1|1|U|922
8BN3|1|1|C|923

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L2
60S ribosomal protein L2-A
Chain M5
Ribosomal protein L15
Chain M7
60S ribosomal protein L17-A
Chain O7
Large ribosomal subunit protein eL37A

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