3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUUAGUAC*GGAACAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BN3_118 not in the Motif Atlas
Geometric match to IL_5TBW_116
Geometric discrepancy: 0.0618
The information below is about IL_5TBW_116
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8BN3|1|1|C|3018
8BN3|1|1|U|3019
8BN3|1|1|U|3020
8BN3|1|1|A|3021
8BN3|1|1|G|3022
8BN3|1|1|U|3023
8BN3|1|1|A|3024
8BN3|1|1|C|3025
*
8BN3|1|1|G|3030
8BN3|1|1|G|3031
8BN3|1|1|A|3032
8BN3|1|1|A|3033
8BN3|1|1|C|3034
8BN3|1|1|A|3035
8BN3|1|1|G|3036

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L3
60S ribosomal protein L3
Chain L9
RPL9A isoform 1
Chain N3
60S ribosomal protein L23-A
Chain Q0
60S ribosomal protein L40-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1378 s