IL_8BN3_158

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8BN3|1|2|U|313, 8BN3|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_158 not in the Motif Atlas

Homologous match to IL_8C3A_410

Geometric discrepancy: 0.0566

The information below is about IL_8C3A_410

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8BN3|1|2|U|311
8BN3|1|2|A|312
8BN3|1|2|U|313
8BN3|1|2|C|314
8BN3|1|2|A|315
8BN3|1|2|A|316
*
8BN3|1|2|U|348
8BN3|1|2|U|349
8BN3|1|2|U|350
8BN3|1|2|C|351
8BN3|1|2|A|352
8BN3|1|2|A|353
8BN3|1|2|C|354
8BN3|1|2|G|355

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

Small ribosomal subunit protein uS17A

Chain D3

40S ribosomal protein S23-A

Chain S8

40S ribosomal protein S8