IL_8BN3_164

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAAUC*GGAG

Length

10 nucleotides

Bulged bases

8BN3|1|2|G|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_164 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.0723

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8BN3|1|2|C|443
8BN3|1|2|C|444
8BN3|1|2|A|445
8BN3|1|2|A|446
8BN3|1|2|U|447
8BN3|1|2|C|448
*
8BN3|1|2|G|458
8BN3|1|2|G|459
8BN3|1|2|A|460
8BN3|1|2|G|461

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

Small ribosomal subunit protein eS4A

Chain S9

Small ribosomal subunit protein uS4A