3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GUGCCAG*CGGUAAUUC
Length
16 nucleotides
Bulged bases
8BN3|1|2|A|579
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BN3_169 not in the Motif Atlas
Homologous match to IL_8C3A_425
Geometric discrepancy: 0.1498
The information below is about IL_8C3A_425
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.2
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8BN3|1|2|G|562
8BN3|1|2|U|563
8BN3|1|2|G|564
8BN3|1|2|C|565
8BN3|1|2|C|566
8BN3|1|2|A|567
8BN3|1|2|G|568
*
8BN3|1|2|C|575
8BN3|1|2|G|576
8BN3|1|2|G|577
8BN3|1|2|U|578
8BN3|1|2|A|579
8BN3|1|2|A|580
8BN3|1|2|U|581
8BN3|1|2|U|582
8BN3|1|2|C|583

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain D3
40S ribosomal protein S23-A
Chain E0
40S ribosomal protein S30-A
Chain S3
40S ribosomal protein S3
Chain SM
STM1 isoform 1

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