IL_8BN3_196

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8BN3|1|2|C|1145, 8BN3|1|2|C|1146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_196 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.0812

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

8BN3|1|2|A|1144
8BN3|1|2|C|1145
8BN3|1|2|C|1146
8BN3|1|2|A|1147
*
8BN3|1|2|U|1604
8BN3|1|2|C|1605
8BN3|1|2|C|1606
8BN3|1|2|C|1607
8BN3|1|2|U|1608

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain D0

RPS20 isoform 1

Chain D8

RPS28A isoform 1

Chain S5

Rps5p