IL_8BN3_213

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GACG*CGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GACG,CGUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_213 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2095

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8BN3|1|2|G|1461
8BN3|1|2|A|1462
8BN3|1|2|C|1463
8BN3|1|2|G|1464
*
8BN3|1|2|C|1517
8BN3|1|2|G|1518
8BN3|1|2|U|1519
8BN3|1|2|C|1520

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain C8

40S ribosomal protein S18-A

Chain C9

40S ribosomal protein S19-A

Chain D5

40S ribosomal protein S25

Chain S5

Rps5p