IL_8BN3_247
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8BN3|1|2|C|1261, 8BN3|1|2|U|1419, 8BN3|1|2|G|1422
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BN3_247 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1025
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8BN3|1|2|U|1259
8BN3|1|2|G|1260
8BN3|1|2|C|1261
8BN3|1|2|A|1262
8BN3|1|2|U|1263
8BN3|1|2|G|1264
8BN3|1|2|G|1265
*
8BN3|1|2|U|1417
8BN3|1|2|C|1418
8BN3|1|2|U|1419
8BN3|1|2|G|1420
8BN3|1|2|U|1421
8BN3|1|2|G|1422
8BN3|1|2|A|1423
8BN3|1|2|U|1424
8BN3|1|2|G|1425
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C0
- Small ribosomal subunit protein eS10A
- Chain D0
- RPS20 isoform 1
- Chain D9
- RPS29A isoform 1
- Chain S3
- 40S ribosomal protein S3
- Chain SM
- STM1 isoform 1
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