IL_8BPO_040
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 8BPO|1|A1|G|748, 8BPO|1|A1|C|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_040 not in the Motif Atlas
- Geometric match to IL_5TBW_020
- Geometric discrepancy: 0.2462
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BPO|1|A1|G|745
8BPO|1|A1|A|746
8BPO|1|A1|A|747
8BPO|1|A1|G|748
8BPO|1|A1|G|749
8BPO|1|A1|U|750
8BPO|1|A1|G|751
8BPO|1|A1|G|752
*
8BPO|1|A1|U|911
8BPO|1|A1|G|912
8BPO|1|A1|U|913
8BPO|1|A1|U|914
8BPO|1|A1|A|915
8BPO|1|A1|C|916
8BPO|1|A1|A|917
8BPO|1|A1|G|918
8BPO|1|A1|C|919
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain L2
- 60S ribosomal protein L14
- Chain R2
- 60S ribosomal protein L18a
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