IL_8BPO_102
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 8BPO|1|A1|U|2661, 8BPO|1|A1|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_102 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1492
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8BPO|1|A1|U|2656
8BPO|1|A1|G|2657
8BPO|1|A1|G|2658
8BPO|1|A1|A|2659
8BPO|1|A1|A|2660
8BPO|1|A1|U|2661
8BPO|1|A1|G|2662
*
8BPO|1|A1|C|2672
8BPO|1|A1|G|2673
8BPO|1|A1|A|2674
8BPO|1|A1|G|2675
8BPO|1|A1|A|2676
8BPO|1|A1|G|2677
8BPO|1|A1|A|2678
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain Q2
- 60S ribosomal protein L19
- Chain Y2
- 60S ribosomal protein L27
- Chain b2
- 60S ribosomal protein L30
- Chain f2
- 60S ribosomal protein L34
- Chain o2
- 60S ribosomal protein L37a
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