IL_8BPO_104
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_104 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.1021
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8BPO|1|A1|A|2832
8BPO|1|A1|A|2833
8BPO|1|A1|C|2834
8BPO|1|A1|A|2835
8BPO|1|A1|A|2836
8BPO|1|A1|U|2837
8BPO|1|A1|G|2838
*
8BPO|1|A1|C|3850
8BPO|1|A1|U|3851
8BPO|1|A1|A|3852
8BPO|1|A1|U|3853
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain B2
- Ribosomal protein L3
- Chain O2
- 60S ribosomal protein L17
- Chain c2
- 60S ribosomal protein L31
Coloring options: