IL_8BPO_147

3D structure

PDB id

8BPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8BPO|1|A1|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BPO_147 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1723

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8BPO|1|A1|C|4582
8BPO|1|A1|C|4583
8BPO|1|A1|A|4584
8BPO|1|A1|U|4585
*
8BPO|1|A1|A|4717
8BPO|1|A1|G|4718
8BPO|1|A1|G|4719
8BPO|1|A1|C|4720
8BPO|1|A1|G|4721

Current chains

Chain A1

28S ribosomal RNA

Nearby chains

Chain B2

Ribosomal protein L3

Chain N2

60S ribosomal protein L13a