IL_8BPO_149
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_149 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.0787
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8BPO|1|A1|C|4596
8BPO|1|A1|U|4597
8BPO|1|A1|C|4598
8BPO|1|A1|A|4599
8BPO|1|A1|G|4600
8BPO|1|A1|U|4601
8BPO|1|A1|A|4602
8BPO|1|A1|C|4603
*
8BPO|1|A1|G|4608
8BPO|1|A1|G|4609
8BPO|1|A1|A|4610
8BPO|1|A1|A|4611
8BPO|1|A1|C|4612
8BPO|1|A1|C|4613
8BPO|1|A1|G|4614
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain B2
- Ribosomal protein L3
- Chain H2
- 60S ribosomal protein L9
- Chain U2
- 60S ribosomal protein L23
- Chain l2
- Ubiquitin-60S ribosomal protein L40
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