IL_8BPO_165
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUU*GUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 8BPO|1|A1|G|5049
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_165 not in the Motif Atlas
- Homologous match to IL_5TBW_132
- Geometric discrepancy: 0.1759
- The information below is about IL_5TBW_132
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_84428.1
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8BPO|1|A1|G|5000
8BPO|1|A1|U|5001
8BPO|1|A1|U|5002
*
8BPO|1|A1|G|5045
8BPO|1|A1|U|5046
8BPO|1|A1|C|5047
8BPO|1|A1|A|5048
8BPO|1|A1|G|5049
8BPO|1|A1|C|5050
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain B2
- Ribosomal protein L3
- Chain V2
- Ribosomal protein L24
- Chain c2
- 60S ribosomal protein L31
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