IL_8BPO_181
3D structure
- PDB id
- 8BPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUGAAUG*CGCG
- Length
- 11 nucleotides
- Bulged bases
- 8BPO|1|A1|A|3711, 8BPO|1|A1|A|3712
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BPO_181 not in the Motif Atlas
- Homologous match to IL_9PN5_084
- Geometric discrepancy: 0.4326
- The information below is about IL_9PN5_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89862.3
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 8
Unit IDs
8BPO|1|A1|C|3708
8BPO|1|A1|U|3709
8BPO|1|A1|G|3710
8BPO|1|A1|A|3711
8BPO|1|A1|A|3712
8BPO|1|A1|U|3713
8BPO|1|A1|G|3714
*
8BPO|1|A1|C|3739
8BPO|1|A1|G|3740
8BPO|1|A1|C|3741
8BPO|1|A1|G|3742
Current chains
- Chain A1
- 28S ribosomal RNA
Nearby chains
- Chain A2
- 60S ribosomal protein L8
Coloring options: