IL_8BQD_004
3D structure
- PDB id
- 8BQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with Map1 (conformation 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 8BQD|1|2|A|46, 8BQD|1|2|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BQD_004 not in the Motif Atlas
- Homologous match to IL_4V88_387
- Geometric discrepancy: 0.1227
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8BQD|1|2|G|42
8BQD|1|2|A|43
8BQD|1|2|U|44
8BQD|1|2|U|45
8BQD|1|2|A|46
8BQD|1|2|A|47
8BQD|1|2|G|48
*
8BQD|1|2|C|431
8BQD|1|2|G|432
8BQD|1|2|C|433
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain c
- 40S ribosomal protein S23-A
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