IL_8BQD_013

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_013 not in the Motif Atlas

Homologous match to IL_4V88_396

Geometric discrepancy: 0.3237

The information below is about IL_4V88_396

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8BQD|1|2|C|186
8BQD|1|2|G|187
8BQD|1|2|A|188
8BQD|1|2|C|189
*
8BQD|1|2|G|196
8BQD|1|2|A|197
8BQD|1|2|A|198
8BQD|1|2|G|199

Current chains

Chain 2

18S rRNA

Nearby chains

Chain V

40S ribosomal protein S8-B