IL_8BQD_023

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_023 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.2793

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8BQD|1|2|C|411
8BQD|1|2|A|412
8BQD|1|2|U|413
*
8BQD|1|2|A|420
8BQD|1|2|A|421
8BQD|1|2|G|422

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A