IL_8BQD_030

3D structure

PDB id

8BQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with Map1 (conformation 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BQD_030 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2221

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

8BQD|1|2|A|550
8BQD|1|2|G|551
8BQD|1|2|G|552
8BQD|1|2|G|553
8BQD|1|2|C|554
8BQD|1|2|A|555
8BQD|1|2|A|556
8BQD|1|2|G|557
*
8BQD|1|2|C|587
8BQD|1|2|U|588

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

RPS2 isoform 1

Chain W

40S ribosomal protein S9-A

Chain g

40S ribosomal protein S30-A